Pumpkin lovers, rejoice! These Healthy Pumpkin Cheesecakes are the perfect dessert to enjoy this fall. Made with Greek yogurt, almond flour, and a blend of warm spices, these mini cheesecakes are light, creamy, and gluten-free. With just 168 calories per serving, they offer all the flavors of a traditional cheesecake with a healthier twist. Whether you’re hosting a holiday gathering or looking for a cozy treat to enjoy at home, these pumpkin cheesecakes are sure to delight!

Table of Contents
Why You’ll Love These Healthy Pumpkin Cheesecakes
These Healthy Pumpkin Cheesecakes stand out for several reasons. First, they are a fantastic lower-fat alternative to traditional cheesecakes, thanks to the use of Greek yogurt and Neufchâtel cream cheese, which provide a creamy texture without all the calories. The almond flour crust adds a satisfying crunch while keeping the recipe gluten-free. Plus, they’re sweetened with natural maple syrup and brown sugar, so they offer just the right amount of sweetness without being overpowering. If you’re looking for a healthy dessert that’s indulgent yet light, these mini cheesecakes are the perfect choice.
Ingredients for Healthy Pumpkin Cheesecakes
For the Crust:
- Almond Flour: Adds a nutty flavor and texture, making the crust gluten-free.
- Brown Sugar: Sweetens the crust and balances the nutty almond flour.
- Ground Cinnamon: Gives the crust a warm, aromatic flavor that complements the pumpkin filling.
- Butter: Helps bind the crust together and gives it a rich, buttery taste.
For the Filling:
- Neufchâtel Cream Cheese: A lower-fat alternative to regular cream cheese, giving the filling its smooth and creamy texture.
- Nonfat Greek Yogurt: Adds a tangy flavor while reducing the overall fat content of the cheesecake.
- Pumpkin Puree: The star of this dessert, pumpkin puree provides the rich, fall-inspired flavor.
- Maple Syrup: A natural sweetener that pairs perfectly with the spices and pumpkin.
- Vanilla Extract: Enhances the flavor profile of the cheesecake.
- Ground Cinnamon, Nutmeg, and Ginger: A blend of spices that brings a warm, comforting taste to the filling.
Alternative Ingredient Suggestions
If you’re looking to make some swaps, here are a few ideas:
- Nut-Free Option: Substitute almond flour with finely ground graham crackers if you prefer a more traditional crust.
- Dairy-Free: This recipe is not ideal for dairy-free diets, but you could experiment with non-dairy cream cheese and yogurt substitutes if needed.
- Sweeteners: While maple syrup and brown sugar provide the best flavor, you can try replacing them with other sweeteners like honey or stevia, but the taste and texture may vary.
Step-by-Step Instructions for Healthy Pumpkin Cheesecakes
- Preheat the Oven: Set your oven to 350°F (175°C) to prepare for baking the crust.
- Prepare the Crust: In a bowl, mix together the almond flour, brown sugar, cinnamon, and melted butter until the mixture forms a coarse, sand-like texture.
- Bake the Crust: Press the mixture into 12 muffin cups lined with silicone or foil muffin liners. Bake for 11-12 minutes, until the edges turn golden brown. Remove from the oven and allow to cool.
- Make the Filling: While the crust cools, add the Neufchâtel cream cheese, Greek yogurt, pumpkin puree, maple syrup, vanilla extract, and spices into a stand mixer or bowl. Mix on high speed for 5-6 minutes until smooth and fully incorporated.
- Assemble the Cheesecakes: Once the crust has cooled, scoop about 3 tablespoons of the filling into each muffin cup, filling them about ¾ full.
- Chill the Cheesecakes: Place the cheesecakes in the refrigerator for at least 6 hours, or preferably overnight, to allow them to set and chill properly.
- Serve: Before serving, sprinkle a pinch of cinnamon or other toppings of your choice. Serve chilled for the best texture and flavor.

Tips & Tricks for Perfect Healthy Pumpkin Cheesecakes
- Room Temperature Ingredients: Make sure that the cream cheese and yogurt are at room temperature before mixing. This will ensure a smooth filling with no lumps.
- Crust Tips: If using foil or silicone liners, ensure they are of good quality to prevent sticking. Paper liners tend to absorb moisture, which can result in a soggy crust.
- Chill Time: While these cheesecakes need at least 6 hours to chill, overnight chilling will give them the best texture and flavor. Be patient!
Pairing Ideas and Variations
These Healthy Pumpkin Cheesecakes are delightful on their own, but you can enhance them with a variety of toppings or side dishes:
- Toppings: Try a drizzle of homemade caramel sauce, whipped cream, or a sprinkle of chocolate shavings for extra indulgence.
- Side Dishes: Serve these cheesecakes alongside a fresh salad or roasted veggies for a well-rounded meal.
- Flavor Variations: If you’re not a fan of pumpkin, you can substitute the puree with other fruits like apple or pear for a seasonal twist.
- Make-Ahead: These cheesecakes are perfect for prepping ahead of time. They can be stored in the refrigerator for up to 5 days or frozen for later enjoyment. Just thaw them in the fridge for 3-4 hours before serving.
Health Benefits of Healthy Pumpkin Cheesecakes
These Healthy Pumpkin Cheesecakes aren’t just delicious—they’re also packed with nutrition! Pumpkin is rich in vitamin A, an essential nutrient for eye health, and is a great source of fiber. Greek yogurt adds a boost of protein, while the almond flour crust provides healthy fats and a satisfying crunch. With minimal sugar and a good balance of healthy fats, these cheesecakes are a much lighter dessert option compared to traditional cheesecake recipes.
Whether you’re looking for a healthier alternative to your usual fall desserts or just craving something creamy and comforting, these Healthy Pumpkin Cheesecakes are a perfect choice. Enjoy them for the holidays or as an anytime treat that satisfies your sweet tooth without the guilt!
Conclusion
These Healthy Pumpkin Cheesecakes are a perfect blend of fall flavors and lightened-up ingredients, making them an ideal choice for anyone craving a sweet treat without the guilt. Whether you’re celebrating a special occasion or simply enjoying the cozy vibes of fall, this recipe delivers on taste, texture, and nutrition. With a creamy pumpkin filling and a satisfying almond flour crust, it’s the dessert everyone will love. Plus, the best part is how easy they are to make! So, gather your ingredients and prepare to indulge in a healthier version of your favorite fall dessert.
Frequently Asked Questions (FAQ)
Can I substitute the almond flour for something else in this recipe?
Yes, you can substitute almond flour with finely ground graham crackers if you prefer a more traditional crust. However, this will no longer make the cheesecake gluten-free. If you’re looking for a nut-free option, graham crackers or even crushed oats could work.
Can I make these Healthy Pumpkin Cheesecakes dairy-free?
While this recipe is not inherently dairy-free, you can experiment with dairy-free cream cheese and yogurt alternatives. However, keep in mind that this may affect the texture and taste, and the final product may differ slightly from the original recipe.
How long do these Healthy Pumpkin Cheesecakes last in the fridge?
These cheesecakes can be stored in the refrigerator for up to 5 days. If you notice any condensation on top, simply blot it with a paper towel before serving. For longer storage, you can freeze them and thaw them in the fridge for a few hours before enjoying.
More Relevant Recipes
- Pecan Pie Cheesecake: A Decadent Dessert Fusion
- Apple Pie Cheesecake Bites: The Ultimate Fall Dessert
- Fluffy Japanese Cotton Cheesecake Cupcakes: A Dreamy Delight

Healthy Pumpkin Cheesecakes
- Total Time: 6 hours 22 minutes
- Yield: 12 mini cheesecakes 1x
- Diet: Gluten Free
Description
Healthy Pumpkin Cheesecakes are the perfect gluten-free, low-fat treat for fall. Made with Greek yogurt, almond flour, and pumpkin puree, these mini cheesecakes are a lighter version of the classic dessert without sacrificing flavor. They are easy to make, creamy, and ideal for any occasion.
Ingredients
- 1 cup almond flour
- 1/4 cup brown sugar, loosely packed
- 1/2 teaspoon ground cinnamon
- 4 tablespoons butter, melted
- 8 ounces Neufchâtel cream cheese (⅓ less fat cream cheese)
- 2/3 cup nonfat Greek yogurt
- 1/2 cup pumpkin puree
- 3 tablespoons maple syrup
- 2 teaspoons vanilla extract
- 3/4 teaspoon ground cinnamon
- 1/4 teaspoon ground nutmeg
- 1/4 teaspoon ground ginger
Instructions
- Preheat the oven to 350°F (175°C).
- Mix together the almond flour, brown sugar, cinnamon, and melted butter until a coarse, sand-like texture forms.
- Press about 1.5 tablespoons of the crust mixture into each of the 12 muffin cups lined with silicone or foil liners.
- Bake for 11-12 minutes, or until the edges begin to brown slightly. Remove from the oven and let the crusts cool.
- In a bowl, add Neufchâtel cream cheese, Greek yogurt, pumpkin puree, maple syrup, vanilla extract, and spices. Whip on high speed for 5-6 minutes until smooth and fully incorporated.
- Once the crusts are completely cool, scoop about 3 tablespoons of filling into each muffin cup, filling them about ¾ full.
- Refrigerate for at least 6 hours or overnight to set.
- Serve chilled, and garnish with a pinch of cinnamon or your preferred toppings.
Notes
- Ensure all ingredients are at room temperature for a smooth filling.
- If using paper liners, be aware that they may cause the cheesecakes to stick. Silicone or foil liners are recommended.
- Allow the cheesecakes to chill for at least 6 hours for the best texture.
- You can freeze these cheesecakes; just thaw them in the fridge for a few hours before serving.
- Prep Time: 10 minutes
- Cook Time: 12 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 mini cheesecake
- Calories: 168
- Sugar: 10g
- Sodium: 128mg
- Fat: 11g
- Saturated Fat: 4g
- Unsaturated Fat: 5g
- Trans Fat: 0g
- Carbohydrates: 13g
- Fiber: 1g
- Protein: 5g
- Cholesterol: 21mg